I've been maintaining the unofficial Stanford University Thesis style for LaTeX for some time now. See https://web.stanford.edu/~emma/suthesis/ for style files. Note that Stanford students have access to the Dissertation and Thesis Help - Wiki. I strongly suggest they look there and also add their suggestions and solutions to it. Other useful sources of info include LaTeX Wikibooks. Remember if you have a problem someone has probably written a package to handle it.
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